HsaINT0188486 @ hg19
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:27193]
Coordinates
chr4:146686131-146686890:-
Coord C1 exon
chr4:146686699-146686890
Coord A exon
chr4:146686318-146686698
Coord C2 exon
chr4:146686131-146686317
Length
381 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCAGCTTCGGTCCTTGCAGGGT
3' ss Score
7.11
Exon sequences
Seq C1 exon
GGGAAGACAGGAAGACCCCCAGCGAATCAAATAGCCCCTCTTCATCCTCCCTCTCAGCTCTGAGTGATTCAGCCAACAGCAAAGATGATTCAGATGGCTCCCAGAAAAACAAGGGCGGGAACAATCTGCTGGTCATCTCTGTCATGCCTGGGAGCCAGCCCTCACTGAACAGTGAGGAAAAGCCAGAGAAAG
Seq A exon
GTAAGGAGGAGGTGGGTGTGAGCCTGCTCAACCCTCCGCACCCAGGATGACCCATTCTTGAGAATAAGCCCTGCACAGGAGCGATGTCAAAAACTGATAATAGGCCCAGGATGCAGTATGCTGGGCCTCACCTAAAGGTTGTATTTCTTTTGGCTTAATTTGAATCCGAGTATGGGGTGGAAGGATGGGGAGGGTGACATTGATTCCGATGTTTGTACATTTAACTCCTTTTAGCACAGAGATATGGGGAACAGTGCCTGGAAGGGTATAGCTGTCAGGCGTCGGAGGAGGCGGGAGGAAGTGGGGAGGAGCTTGGCTCCACTCCTGCCCTCCTCTCCCCGCTGCCCTGTGCACCTCTATACCCAGCTTCGGTCCTTGCAG
Seq C2 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGTCATCTGCAGATACACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAAGTAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612-ZNF827:NM_178835:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=PD(17.9=32.3)
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=39.3),PF121713=zf-C2H2_jaz=WD(100=36.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCAGCGAATCAAATAGC
R:
GGGGACAGTGTGGCATTTCTT
Band lengths:
342-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)