HsaINT0188486 @ hg38
Intron Retention
Gene
ENSG00000151612 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:145764988-145765738:-
Coord C1 exon
chr4:145765547-145765738
Coord A exon
chr4:145765166-145765546
Coord C2 exon
chr4:145764988-145765165
Length
381 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCAGCTTCGGTCCTTGCAGGGT
3' ss Score
7.11
Exon sequences
Seq C1 exon
GGGAAGACAGGAAGACCCCCAGCGAATCAAATAGCCCCTCTTCATCCTCCCTCTCAGCTCTGAGTGATTCAGCCAACAGCAAAGATGATTCAGATGGCTCCCAGAAAAACAAGGGCGGGAACAATCTGCTGGTCATCTCTGTCATGCCTGGGAGCCAGCCCTCACTGAACAGTGAGGAAAAGCCAGAGAAAG
Seq A exon
GTAAGGAGGAGGTGGGTGTGAGCCTGCTCAACCCTCCGCACCCAGGATGACCCATTCTTGAGAATAAGCCCTGCACAGGAGCGATGTCAAAAACTGATAATAGGCCCAGGATGCAGTATGCTGGGCCTCACCTAAAGGTTGTATTTCTTTTGGCTTAATTTGAATCCGAGTATGGGGTGGAAGGATGGGGAGGGTGACATTGATTCCGATGTTTGTACATTTAACTCCTTTTAGCACAGAGATATGGGGAACAGTGCCTGGAAGGGTATAGCTGTCAGGCGTCGGAGGAGGCGGGAGGAAGTGGGGAGGAGCTTGGCTCCACTCCTGCCCTCCTCTCCCCGCTGCCCTGTGCACCTCTATACCCAGCTTCGGTCCTTGCAG
Seq C2 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAACATGTTTGAGCGTCATCTGCAGATACACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151612:ENST00000508784:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139091=zf-H2C2_5=PU(4.2=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCAGCGAATCAAATAGC
R:
GGGGACAGTGTGGCATTTCTT
Band lengths:
342-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains