RnoINT0168682 @ rn6
Intron Retention
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32403505-32404192:-
Coord C1 exon
chr19:32404001-32404192
Coord A exon
chr19:32403683-32404000
Coord C2 exon
chr19:32403505-32403682
Length
318 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCAGCTTCGGTCCTTTCAGGGT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGGATGATAGGAAGACCCCCAGTGAATCAAACAGCCCCTCCTCATCCTCACTGTCAACTCTGAGTGATTCAGCCAATGGCAAAGATGACTCAGACAGCTCCCAGAAAAACAAGGGTGGGAACAACTTGCTGGTCATCTCTGTGGTACCCGGGAGCCAGCCCTCACTGAACAACGAAGAAAAGCCAGAGAAAG
Seq A exon
GTGAGAGGGCTGGGTGTGGCCTGCTCACCTTGACCACTCCAGGTGAATTAGTCTGGAGAATAAACCTTGGTGAGGAAAACAAACTGCAGTACGGTGCTCACTACTGAAAAGAAGCCCTTGGTCGTGGCTTGATCCAATTTGGGCTGGGAAGTGGGCGGGGCGTGGACTCTGAAGCTGAATGCTCAGCTGTTTAGTGGACGATTAGGGATGGTGCCTAGACAGCAGAGGTGCAGGGTCGGAAGGAAGGGGAGCTCAGCCCCCACCTGCTGCCTGCTGTCCTTCCCCACACACTCCTACACCCAGCTTCGGTCCTTTCAG
Seq C2 exon
GGTTCGAATGTGTTTTTTGCAACTTTGTCTGCAAGACGAAGAATATGTTTGAGCGCCATCTGCAAATCCACCTCATCACCCGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACCCCCGAACAGCTGCTGGAGCATAAGAAATGCCACACTGTCCCCACCGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697:ENSRNOT00000015929:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCAGTGAATCAAACAGC
R:
GGGGACAGTGTGGCATTTCTT
Band lengths:
342-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]