GgaINT0076315 @ galGal3
Intron Retention
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32339968-32340433:-
Coord C1 exon
chr4:32340242-32340433
Coord A exon
chr4:32340146-32340241
Coord C2 exon
chr4:32339968-32340145
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCCTTTTTTTCATTTTTCAGGCT
3' ss Score
11.37
Exon sequences
Seq C1 exon
CTGAGGAGAGGAAGACACCCAGTGACTCTAACAGTCCATCTTCATCTTCACTGTCAGCACTCAGTGACTCTGCTAACAGCAAAGAAGATGCAGATATTTCTCCAAAAAACAAGGGTTCAAACAACCTGCTGGTCATTTCTGTAGTGCCTGGTACTCAGACCTCACTGAATACTGAAGAGAAGTCAGAGAAAG
Seq A exon
GTAAAAACCCCATTAAGCAAATACAAACTGTCACCTTCTATCAGTAGATCCGGCCACAGTTATCAGGAATGCTTTTTCCTTTTTTTCATTTTTCAG
Seq C2 exon
GCTTTGAATGCGTTTTCTGTAACTTTGTCTGCAAAACAAAAAATATGTTTGAGCGCCATCTGCAAATCCACCTGATCACACGGATGTTTGAGTGTGATGTGTGCCACAAGTTCATGAAGACACCCGAGCAATTATTGGAGCACAAGAAATGCCACACTGTCCCCACTGGTGGGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982:ENSGALT00000032243:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF058767=Terminase_GpA=PD(26.9=53.8)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=43.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTACTCAGACCTCACT
R:
TGCTCGGGTGTCTTCATGAAC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]