DmeEX6016395 @ dm6
Exon Skipping
Gene
FBgn0002466 | sti
Description
The gene sticky is referred to in FlyBase by the symbol Dmelsti (CG10522, FBgn0002466). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 3L:12507998..12514815. Its molecular function is described by: ATP binding; protein serine/threonine kinase activity. It is involved in the biological process described with 12 unique terms, many of which group under: nervous system development; chromosome organization; regulation of cellular component biogenesis; metabolic process; central nervous system development. 29 alleles are reported. The phenotypes of these alleles manifest in: imaginal tissue; male-specific anatomical entity; follicle cell; intracellular organelle; spermatocyte. The phenotypic classes of alleles include: increased mortality; phenotype; sterile; modifier of variegation. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chr3L:12513462-12514815:-
Coord C1 exon
chr3L:12514382-12514815
Coord A exon
chr3L:12513881-12514125
Coord C2 exon
chr3L:12513462-12513824
Length
245 bp
Sequences
Splice sites
3' ss Seq
TATCTAATTTCCTACTCCAGTTC
3' ss Score
7.12
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTCTGGAAAGTGAGCACGCATCCCTGGCTCTTCGGCTTCCCTCGGCGCATTTTTTTCAAAGCGAAACGGCAGAAAAATGCTCTGGCATTTTACGGATTTCTAATTGTATTATTTATGTGAGAAAATTGCAAATAAAAGTGAGTCCATCATGCCACCCAAGATGGAGCCGATTAGCGTGCGCACCGCGCGTCTGAACAACCTGATTCTGGGCAAAGGAGCTGGCGTCTGTGCGAAGCCCGCTGGAAGCGCCTCCGGATCAGGTATTCCCGCCTCCACCAGGAGAAGCATTGTACCCGTGAGCACCACTAGCGCCGCCGTGGCCGAGGCCATCTGCCGCGAGGGACTCCTGGACGCCTTCTGTCTGCTGTACAACGAGTGCGACAAGGATACGCTGAAGAAGCGCGATCGCAACATCGCCGAGTTTGTCAACAAAT
Seq A exon
TTCGTCCCATCATAGAGGAGACCCGCAAACTCAGGGTCAACGCAGATGACTTCCTCATCAAGACGCTTATTGGCCAAGGATACTTTGGCAACGTTCACCTGGTGGTGGAGCGGCAAACCAACGACATATACGCCATGAAGAAGATCAAAAAGTCGGTGGTGACGACGTCACAAGTCAAGGAGGAGCGCGATATCATGTCCATTCGCAACTCTGAATGGCTAATCAATCTGCAGTATGCCTTTCAG
Seq C2 exon
GATAACGACAATCTGTACCTGGTCATGGAGTACATGCCCGGCGGAGACCTTCTCAGCTTGATGTCACGCCACGGCCCTTTCGATGAGGACTTGGCTCGTTTCTATCTGGCCGAGCTCACAGTGGCCCTGCACACATTGCACGAGATGGGCTATGTGCATCGGGATATAAAGCCTGAAAATATACTGATTGATCGTTTTGGCCATATTAAACTGGCTGATTTCGGTAATGCCGCTGCCTTGGATCGCGATGGCCATGTGCTGAGTTTGTCGCCGGTGGGAACACCGGATTACATAGCTCCAGAGCTGCTGCAAACCATATCCACCTACAAGCTGTCCAAGTCGATGCACGATGTGAGTAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0002466-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(24.0=78.0)
C2:
PF0006920=Pkinase=FE(44.3=100)
Main Inclusion Isoform:
FBpp0304889

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0075702
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATTGTACCCGTGAGCA
R:
TAGCCCATCTCGTGCAATGTG
Band lengths:
305-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)