GgaEX1015560 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9831708-9835312:+
Coord C1 exon
chr15:9831708-9831849
Coord A exon
chr15:9833320-9833495
Coord C2 exon
chr15:9835211-9835312
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAAATGTCTTATTTTTATAGATG
3' ss Score
8
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
GGGAAGCCACTCTTTGTGACTCAACAGCAGATGTCTCCTCTCTCCCGGGAAGGCATCCTTGATTCTTTATTCGCTCTTTTTGAAGAATGTAGAAACCCTGCTTTAATGAAAATCAAACACGTTGGCAACTTTGTCAAGAAGT
Seq A exon
ATGCAGAGACTATAGCTGAATTAAGGGAACTCCAACCCAGTGTGAAGGATTTTGACGTAAAGAGTGTGGTTGGCTGTGGTCACTTTGCAGATGTAAAAGTAGTAAGAGAGAAAGTTACTGGTGATGTGTACGCTATGAAGGTGATGAGCAAGGAGTCTTTGTTGGCACAGGAGCAC
Seq C2 exon
GTGTCATTTTTTGAGGAAGAACGCAGCATATTATCTCAGAGTACCAGTCCATGGATTCCACAGTTACAATATGCATTTCAAGACAAGAAAAATCTTTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'4-5,'4-2,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(15.5=69.5)
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGACTCAACAGCAGATGTCT
R:
AAAGATTTTTCTTGTCTTGAAATGCA
Band lengths:
226-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]