RnoEX6064773 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46476324-46488288:-
Coord C1 exon
chr12:46488147-46488288
Coord A exon
chr12:46480054-46480229
Coord C2 exon
chr12:46476324-46476425
Length
176 bp
Sequences
Splice sites
3' ss Seq
GACTCTTCCTCCTTCCACAGATT
3' ss Score
11.49
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGGAAACCGCCCCTCATGACTCAACAGCAGATGTCTGCTCTTTCCCGGGAAGGGGTGTTAGATGCCCTCTTTGTTCTCTTGGAAGAGTGCAGTCAGCCTGCCCTCATGAAGATAAAGCACGTGAGCAGCTTCGTCCGGAAGT
Seq A exon
ATTCTGACACGATAGCCGAGTTACGGGAGCTCCAGCCGTCGGTGAGGGACTTCGAAGTGCGAAGTCTTGTGGGCTGCGGTCACTTCGCCGAAGTGCAGGTGGTTAGAGAGAAGGCCACCGGGGATGTCTACGCCATGAAGATCATGAAGAAGGCGGCTTTGCGGGCCCAGGAGCAG
Seq C2 exon
GTTTCATTTTTCGAGGAGGAGAGGAACATATTATCCCAGAGCACGAGCCCTTGGATCCCCCAATTACAGTACGCCTTTCAGGACAAAAATAACCTTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-'5-4,'5-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(15.6=69.5)
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCGCCCCTCATGACTC
R:
CAGGTAAAGGTTATTTTTGTCCTGA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]