HsaEX6069476 @ hg38
Exon Skipping
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119850174-119862907:-
Coord C1 exon
chr12:119862807-119862907
Coord A exon
chr12:119857523-119857687
Coord C2 exon
chr12:119850174-119850275
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCAGATTCCGACACCATA
3' ss Score
-20.82
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTTTTTAGGGAAGTGATTTAATCACTTCCCTAAAAGTCCTACCTCGTTTTTTTTTTTGGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAG
Seq A exon
ATAGCTGAGTTACAGGAGCTCCAGCCTTCGGCAAAGGACTTCGAAGTCAGAAGTCTTGTAGGTTGTGGTCACTTTGCTGAAGTGCAGGTGGTAAGAGAGAAAGCAACCGGGGACATCTATGCTATGAAAGTGATGAAGAAGAAGGCTTTATTGGCCCAGGAGCAG
Seq C2 exon
GTTTCATTTTTTGAGGAAGAGCGGAACATATTATCTCGAAGCACAAGCCCGTGGATCCCCCAATTACAGTATGCCTTTCAGGACAAAAATCACCTTTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-'11-9,'11-8,12-9
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF115393=DUF3228=PU(49.5=96.4),PF0006920=Pkinase=PU(42.7=74.5)
C2:
PF115393=DUF3228=FE(30.8=100),PF0006920=Pkinase=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTAATCACTTCCCTAAAAGTCC
R:
CAGATAAAGGTGATTTTTGTCCTGA
Band lengths:
189-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains