DreEX6008958 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2361322-2363041:-
Coord C1 exon
chr5:2362900-2363041
Coord A exon
chr5:2362400-2362575
Coord C2 exon
chr5:2361322-2361423
Length
176 bp
Sequences
Splice sites
3' ss Seq
CATTTTTGTGTGTGTGTCAGATT
3' ss Score
9.07
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGGAAGTGCAGTATGTCTGGTTTTACAGGAGTGAATGCACTGAGCAGAGAGGGACTGATTGATGCTCTGCTGCTGCTCTTTCAAGAGTGTTCAACACCAGAGCTCATGAAGATCAAACATGTGGCCAACTTTGTTAATAAAT
Seq A exon
ATTCTGAAGTGGTGGCTGAAGTTCAGGAGCTTCTCCCTGGAAAGAAGGATTTTGAGGTGAGGGGAATTGTGGGAAGAGGACAGTTCTCCGAGGTGCAGGTGGTGAAGGAGAGAGCCACAGGAGACGTGTACGCCATGAAGATCATGGACAAAAACAGCCTGCGCTCTCACCACAAT
Seq C2 exon
GTGGCTTTTTTTGAAGAGGAGAAAAGCATCCTTGCCTTGAACTCCAGCCCCTGGATACCTCAGCTTCAGCATGCTTTCCAGGACCAGGACCATGTCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(15.5=69.5)
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTGCAGTATGTCTGGT
R:
GACAGACATGGTCCTGGTCCT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]