MmuEX1006860 @ mm10
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115851152-115863059:+
Coord C1 exon
chr5:115851152-115851293
Coord A exon
chr5:115859198-115859373
Coord C2 exon
chr5:115862958-115863059
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCCGTCTCCCACAGATT
3' ss Score
12.8
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGGAAACCGCCCCTCATGACTCAACAGCAGATGTCTGCTCTTTCCCGGGAAGGGATGCTAGACGCCCTCTTCGCTCTCTTTGAAGAGTGCAGCCAACCCGCCCTGATGAAGATGAAGCACGTGAGCAGCTTTGTCCAGAAGT
Seq A exon
ATTCCGACACCATAGCCGAGTTGCGGGAGCTGCAGCCGTCGGCGAGAGACTTCGAAGTTCGAAGCCTTGTGGGCTGTGGTCACTTCGCTGAAGTGCAGGTGGTTAGAGAGAAGGCGACCGGGGACGTCTATGCCATGAAAATCATGAAGAAGAAGGCTTTGCTGGCCCAGGAACAG
Seq C2 exon
GTTTCATTTTTCGAGGAGGAGAGGAACATATTATCTCGGAGCACGAGTCCTTGGATCCCCCAGTTACAGTACGCCTTTCAGGACAAAAATAACCTTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-'4-14,'4-13,7-14
Average complexity
S
Mappability confidence:
90%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041927=Utp21=FE(48.5=100)
A:
PF041927=Utp21=PD(41.2=67.8),PF0006920=Pkinase=PU(51.9=69.5)
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCGCCCCTCATGACTC
R:
CAGGTAAAGGTTATTTTTGTCCTGA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types