DreEX0000795 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52387395-52392581:+
Coord C1 exon
chr9:52387395-52387456
Coord A exon
chr9:52389987-52390052
Coord C2 exon
chr9:52392537-52392581
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCATTCCCACCTACTACAGGAA
3' ss Score
7.44
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
CAATCATGGCAGCAGAAGAGCGGCGCAAACACAAGGAGCAAATGAAGATCCTCAAACAACAG
Seq A exon
GAAAAGTTCAGGAGAATCCAGCAGGTCCGAATGGAGAAGGAACTACGAGCTCGACAGGTTTTGGAG
Seq C2 exon
GAGAAGGAGCTGCGCAGACAGCAGACCATCATTCTTAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979_MULTIEX1-4/13=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.045 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATGGCAGCAGAAGAGCG
R:
GGTGCTTAAGAATGATGGTCTGC
Band lengths:
104-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]