DreEX0008661 @ danRer10
Exon Skipping
Gene
ENSDARG00000079004 | TANC2 (1 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr12:3205584-3209215:-
Coord C1 exon
chr12:3209083-3209215
Coord A exon
chr12:3206910-3206942
Coord C2 exon
chr12:3205584-3205675
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCACTGACCTTCGGCTGCAGGAT
3' ss Score
8.06
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGCAGTTCCTGGTGGATCATGGGGCTTTGGTAGAGCATGTGGACTACAGTGGGATGCGTCCTCTGGACCGAGCTGTCGGCTGCAGAAACACATCAGTGGTGGTCGCCCTGCTCAAAAAAGGAGCCAAAATCG
Seq A exon
GATGTCAGACGCTGCCGAGTCCACACAAAGGAG
Seq C2 exon
GTCCTGCTACCTGGGCAATGGCGACATCTAAACCTGACATCATGATTATCCTACTGAGTAAACTTTTAGAGGAAGGAGATGGCTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079004_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.048
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(15.1=31.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000109164fB760
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGTGGGATGCGTCCTCT
R:
TTAGATGTCGCCATTGCCCAG
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]