DreINT0020752 @ danRer10
Intron Retention
Gene
ENSDARG00000079004 | TANC2 (1 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr12:3205584-3209215:-
Coord C1 exon
chr12:3209083-3209215
Coord A exon
chr12:3205676-3209082
Coord C2 exon
chr12:3205584-3205675
Length
3407 bp
Sequences
Splice sites
5' ss Seq
TCGGTATAT
5' ss Score
4.42
3' ss Seq
AACATCCTGTAACCCCTTAGGTC
3' ss Score
7.53
Exon sequences
Seq C1 exon
GTGCAGTTCCTGGTGGATCATGGGGCTTTGGTAGAGCATGTGGACTACAGTGGGATGCGTCCTCTGGACCGAGCTGTCGGCTGCAGAAACACATCAGTGGTGGTCGCCCTGCTCAAAAAAGGAGCCAAAATCG
Seq A exon
GTATATGACAAGTAGCTACATTTAGATGCCAATCAAACAATCCATTAGCAATTCATTTAATGATCAGATTGAAAAGCCGTCACATAGAAACACTAACCAATCAATTTCAAAGTACATTTCAAATAGATCAAGTTAAAAGGGTTGGACCTAAAGTAATCTAATCAACAAGAGAAACAATTCAGCAAGCAAAGCTTTCTATCTCAATGTTTTCTCACATTTGGATTCAAAAATACCTTGTGCACTTGTTCAGTGCCAACAGTACGGTGGCCGGAAAGTGCAAAACAACATTACAAAGTGTGAAACACTTCTACAAAGCTCGAGACAAATTTACATTTTGAAAAAAACATTTTTACTTATCATCAGACACAATTACATAGGAAAAACTATTTAACCAAGGACAACACAATTTTACATTTTAGAAAAAAAAATTTACAATTACAGATTCCCTTCGGAAAGGGCATGTACCACACACCGGAAGTGACGTGAATGTACCACACCGGGAGTGACGCAGGGGAAATTTGTTGTTGTTGTTGGTGAGCGCGGTTAATTCGTGCTGTGGAGTACATGGTGCAAACAAGGTTTATGGTGACCGAACATGGTCAGCGGTCGAGGGTTGTTTTGCCTGTTTTGTGGCAAACACGTGAGCAGCTTAACGCGGTTTTGCTTTATGTGTGGTCTGTGTTTAGAGTTTATAAAGGACGCGGAGCAGACGGAAACACCAGACATACTGCATCAATGTGTTTAATATTTTAACGAGAGCCACTCATACGCTGTAATCGTGGACATGATGTCAAGTCTACACGGTGTAAACATCTGTTTGAGGAATCTTAACAGTAAACTGAAGGAAGCCGGTGTTACGGTTTAACTGGTGTCCGTGTTAACTGAGGCCCCTTTTCAGATGTGAACTATTCACGTTTGCAGATTGGCAGATTCGTCACTTTTTCACGGCAACAAAACATGCCCATACCAAATAAATATTCTTATTACTTGGTGTCAGTGTAAACATTATTGATTTTAATACCTGTGTAGCAGAACAGTATAAACCAAAATGAATGCAAAGAAATTATTTCAATTGACATGTCATCAACGGGATTCGAACCCAAGCCAAAAGGTTCTGCGTAAGTAACAACCGACCTATCTATCTGAGCTACTCGGGTCTACAGATTGGGGTCGGTTTTGATATCTTTATCAGTGACATGTGCTGTGCTTTGATTGTTTTTACACACTCTCACGCTGACATTTTCTCAGAATAGCTCTAATATGTTTTAATCGCAGTTGGTCAAACCATAATTTTTATAGTTGTCGACTTGCGAAATCCTGTCTACAAAGTCATACACAAGCTGGATATTACTGATATTTTCCAGTGTGTGTGGTACATTCACGTCACTTCCGGTGTGTGGTACATGCCCTTTCCGTAGGGAATCTGTAATTGTAAATTTGTTTCGGGATTTGTAAAAGTGTTTTGCGTCTTGTTTTTTTTTTTCTAAAATGTAAATTTGTTTCATCCTTGGTAAAATAGTTTTTCCTATGTAATTGTGTCTGATGATCAGTAAAAATGTTTTTCAAAATGTAAATTTCTCTTCAGCTTTGTAAAAGTGTTTCACACTTTGTAATGTTGTTTTGCACTTCCCGGCCACCGTACAACAGACATACTTCGATAGAAATCTCTTCTGCCAAATATTTCAGCCCTTTTTTAAACCCTCATGTATGCGATCGTTTTCATGTAGCTTAGCTTGTGCTCGGCTGCTGTAGCATTCTGCTGCTCTGCTTTACTCCACTGACTCCAACTGGGTCTCACTGAAATCGTTTGTATTGTTTGCATTTTGTTTCCAGTCTGTTTCTCTTGCTTTGTTGCGCTCTTGCCGTAGTGTCTATCTTTCTCTGTTTGTCAAGTCAGTGGTTGGTAAGAGGTAGTTAGCCGCTGTTTTGTTGGTTTACTTTCAAGTTTTTATCCTTTAGCTAAAGCTCTTATTCCCCACCACTCACGGCTGCTTTTTTGTGTTCCCCCTCACCTTTCCTCCACAACCACCGCATCTCTTTCACTCACCAACACGCACACACGCCACTCTCATATCACTCCATCTCGATCTCCCCGCAACCTCACTCCCTCGCTCTCATAACCACTGACCTTCGGCTGCAGGATGTCAGACGCTGCCGAGTCCACACAAAGGAGGTACTGCTTGTGCTCGGCCTGCTCACATCTTGCTTCCCTTCAAGCATCCTGACAGCTCTTTTCTCTATGTTCTGTGTTCGGTGATGTGTTTGGGTGCTGCAGGATGAGCTGGAATTGTAAACTGTTCTTAAAAAAAAGTCTTATGAATGGACAACATAATAATTGAACCTCCGGGGCTATGTAATACCTAGTTTAAACATGGCAAAAAGGGTTGGGAACTTCTGTATTATGCTGTAGCTTCTCGTTAATGATTGAGGGTGTACTCACACTTGCCTTGCACTGAGCCCGGGTGCGATTGTGTCCCCTCCCCTCTTCACAGACGGCTTCCCAGTCCCTTAAAAGTGACAGAGTCTTCAGTTTTGCACTCACACTAAATGTTTACCACATCTGAGCCCAACCGAACCACTCTCTAACCCACCTAGTTCAACCAGGTCAGGGCCGGCCAACCTAGAACACCAACACTAGTCAAATAAACTGGGAAATGGGATAGCGTAGTGCAGGGGTGTCCAAACTCGGTAGCTGATAGAGAAATTCACCCCAGACAGAACAACAGATCAAAGGCAACAGCACTGACATTGTCAAGCCAGCATAATAATTACTAGAGTAAACAGCGGTGTCTATTTTCTGCAGTGCTGTGTGGATCTGAAGTCCAGAGTGCTCCGACTCCACAGCCCAGAGCAGGAGCTTCCCTTCCTGGACGCACCTGCCTGCAGCCAGTGCCATCACCACGACAACAACAAAAACATGTGACCTCCGACCTCTGTGCCCAACAACCGTCATGACCCATGTCATCAGAGAGGAAGATAACTAACAGGACGCCTGCATCTGGACTGTAGTGTTCCCTCGTGCCAGATCAACATACACAGGCCTCTCCTCTCCTCTCTCATCTTTCCTTCTTTATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCCTCCAGGACCGAGTTTGGACATGCCTGGCGTAGTGTGAGTACACCCTTAATTGTAAACTGAATGAGAAATCGAGTTCACACTGAAGGGATCCTCGTCCTGTTGCCCATGCCTTCATCAGTCTGTTGTGACTCCTGAGCACTCTGCACTCCTCCGTCTCTCTCCACGTTGTCCCCTCAAACCTTTGATTGTTCATTTTGACCCATCAAACATCCTGTAACCCCTTAG
Seq C2 exon
GTCCTGCTACCTGGGCAATGGCGACATCTAAACCTGACATCATGATTATCCTACTGAGTAAACTTTTAGAGGAAGGAGATGGCTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079004:ENSDART00000109164:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(15.1=31.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]