DreEX0009360 @ danRer10
Exon Skipping
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20276549-20279353:-
Coord C1 exon
chr24:20279165-20279353
Coord A exon
chr24:20276910-20276969
Coord C2 exon
chr24:20276549-20276773
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACTTTACGTGTATATTCCAGGGA
3' ss Score
7.86
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
Exon sequences
Seq C1 exon
ATTTTTCTCTGGATTGGTAACTCGGCAAACCAGTATGAGATCCAGGAGTCCAGCAGCAGTGCAGTAGAGTATCTGAAGACTCATCCGGCAGGACGGGACGCCGGGACCCCCATCACCACTGTTAAACAAGGCTACGAGCCGCCAACCTTCACCGGCTGGTTCAACGCCTGGGACGCGCACAAGTGGAGC
Seq A exon
GGAGGCCTTTCATATGAAGAGATGAAAAGCAAGCTGGGTGATGTTTCACAAATCACTGTG
Seq C2 exon
AGTCTCAACAACACAGACTTGAATAAGAAGCCAGGAGGAGGTGTGGGAAACTACAGCGCTCCTGGGGGACCGGGGAGTATACGCTCCCACAATCAGAGGATGTCCAGTGTACAGTTCGGAGATGGGTCTCAAAACAGAGCAAAGCCTTCTGGGATGCAAAATTCAGAGCAGCTTGTTAAAATGCCAAATCAGCTGCCTCAAGGACTGGATCCTGAAAAACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.050 C2=1.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCCATCACCACTGTTA
R:
CGCTGTAGTTTCCCACACCTC
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]