BtaEX6093312 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11495071-11496171:+
Coord C1 exon
chr22:11495071-11495256
Coord A exon
chr22:11495424-11495495
Coord C2 exon
chr22:11495896-11496171
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATCCTGATTCTTGCCCCTAGAAC
3' ss Score
9.17
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCTTCCTGTGGTTGGGGGCAGCTGCCAGCGAGTGGAAGCAGGAGGCTGTGGCCTGGGGCCAGGAGTACCTGAAGACCCACCCGGCAGGGAGGAGCCTGGCCACACCCATTGTGCTGGTCAAGCAGGGCCACGAGCCTCCCACCTTCATTGGATGGTTCTGCACCTGGGACCCCTACAAATGGAGT
Seq A exon
AACACCCAGTCCTACGAGGAGGTGGTGGCGGGTGACCCGGGAGCAGTTTCTACCATCTCTGAGATAACAGCC
Seq C2 exon
GAGATCGTCAACTTCCGGCTGTCCAGATGGCCAGGCAATGACAGGGCAGGCCCGTTGGCCCTGCGGGCCCTCAAGAGCTCCGAGGACATCTCAGAGAGTGAGCTGGAGCTGGGCCCCCGCGCAGGCACCGGCAGCCGGAGCACCGTCAGCAGCGCCAGCAGCAGCAGCTACCAGAGCAGCCCCCAATCCCTGGGCAGTGGGGGCCTGCCCCGGGAACAGCTGAGGCACCAGGCTGCCGAGGACCTGCCGGAGGGCGTGGACCCGGCCCACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963-'26-23,'26-22,27-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.717
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.6=79.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTACCTGAAGACCCACC
R:
CTGTCATTGCCTGGCCATCTG
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]