MmuEX6069664 @ mm10
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119069883-119070814:+
Coord C1 exon
chr9:119069883-119070068
Coord A exon
chr9:119070278-119070349
Coord C2 exon
chr9:119070557-119070814
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGTCCAACTCTTGACCCCAGAAC
3' ss Score
4.17
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACCGGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATG
Seq A exon
AACAGCCAGTCCTACGAGGAGATGGTGGGGAACAGCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCA
Seq C2 exon
GAAGTCCATAACTTCCAGCTAACTCCACGGCTGAGTGATAACAAGGCAGGTCACCCGGCACTGCAGGCCTTCAAGGGTTCCCAGGACAGTCCAGAGAATGAGCTGGGGCTGGACCTCAGGGTGGATGGCGCAAACCCCAGCATGAACCACACCAGCAGCTGCAGTGACTCAATGGTCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCACTGGAGGACCTGCCACCGGGTGTGGACCCAGCCCGTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-'33-49,'33-40,37-49=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.702
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(64.5=79.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGTCAAGCAAGGCCAT
R:
TCTCTGGACTGTCCTGGGAAC
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types