MmuEX6069664 @ mm9
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118979001-118979932:+
Coord C1 exon
chr9:118979001-118979186
Coord A exon
chr9:118979396-118979467
Coord C2 exon
chr9:118979675-118979932
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGTCCAACTCTTGACCCCAGAAC
3' ss Score
4.17
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACCGGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATG
Seq A exon
AACAGCCAGTCCTACGAGGAGATGGTGGGGAACAGCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCA
Seq C2 exon
GAAGTCCATAACTTCCAGCTAACTCCACGGCTGAGTGATAACAAGGCAGGTCACCCGGCACTGCAGGCCTTCAAGGGTTCCCAGGACAGTCCAGAGAATGAGCTGGGGCTGGACCTCAGGGTGGATGGCGCAAACCCCAGCATGAACCACACCAGCAGCTGCAGTGACTCAATGGTCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCACTGGAGGACCTGCCACCGGGTGTGGACCCAGCCCGTAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-'28-30,'28-29,29-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.702
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(64.5=79.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGTCAAGCAAGGCCAT
R:
TCTCTGGACTGTCCTGGGAAC
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: