GgaEX0008090 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:4517549-4520722:+
Coord C1 exon
chr2:4517549-4517737
Coord A exon
chr2:4519606-4519674
Coord C2 exon
chr2:4520474-4520722
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACGACTCTCTTTACTTTCAGGAT
3' ss Score
10.93
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
Seq A exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
Seq C2 exon
GACCTGAACAACATCAGCCTGAGCAAAAGAACCCTCAGCATGACCAATCTGACTGGTTCAAGCACATCAAGTGCTTCCCCGGAGTACAAATCGCACTTCAACCACAATGACAGCAGCAGCTACGCCAACAGCAGCGCCAACGGCAGCCCTTTCACAGTGCCCAGTGAAAAGGGAGTTTACTCCCGAGAGGTGCTGATGAACAAAACTGTGGATGAACTTCCAGAAGGAGTGGATCCCACTAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.410
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
PF062807=DUF1034=PU(13.1=56.5)
C2:
PF062807=DUF1034=FE(82.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACTGGTGAAGCAGGGCTG
R:
CGATTTGTACTCCGGGGAAGC
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]