RnoEX6038125 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127751872-127752771:+
Coord C1 exon
chr8:127751872-127752057
Coord A exon
chr8:127752264-127752335
Coord C2 exon
chr8:127752514-127752771
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACAGTAACTCTTGACCTCAGAGC
3' ss Score
4.55
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGCAGCAGTAGCCTGGGGCCATGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCATTGTGGTCAAGCAGGGCCGTGAGCCTGCCACCTTTACTGGGTGGTTTGTCACCTGGGACCCCTACAAGTGGACG
Seq A exon
AGCAGCCAGTCCTACGAGGAGATGGTGGAGGGCAGCCTGGGTCCGGGATCTGCAATCTCTGAGATAACAGCA
Seq C2 exon
GAAGTCCATAATTTCCAGCTAACTGCACGGCCGAGTGATAGCGAGGCAGGCCGCCCGACACTGCTGGCCTTCAAGGGTTCCCAGGATAGCCCAGAGAATGAGCTGGAACTGGGCCTCAGGGTGGATGGCGAGACGCCCAGCATGAATCACACCAGCAGCTGCAGTAGCTCAATGATCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCCCTAGAGGACCTGCCACAGGGTGTGGACCCAGCCCGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'25-34,'25-32,26-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.083 C2=0.698
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(62.8=79.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCCTGCCACCTTTACTG
R:
GCCCAGTTCCAGCTCATTCTC
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]