HsaEX6055044 @ hg19
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38047283-38048191:+
Coord C1 exon
chr3:38047283-38047465
Coord A exon
chr3:38047672-38047743
Coord C2 exon
chr3:38047940-38048191
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGCCCCGATTCTTGCTCCAGAGC
3' ss Score
7.67
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATCTTCCTGTGGCTTGGGGAAGCTGCAAGTGAGTGGAAGGAGGCGGTGGCCTGGGGCCAGGAGTACCTGAAGACTCACCCAGCAGGGAGGAGCCCGGCCACACCCATCGTGCTGGTCAAGCAGGGCCATGAGCCTCCCACCTTCATTGGATGGTTCTTCACTTGGGACCCCTACAAGTGGACT
Seq A exon
AGCCACCCGTCCCACAAGGAAGTGGTGGATGGCAGCCCGGCAGCAGCATCAACCATCTCTGAGATAACAGCA
Seq C2 exon
GAAGTCAACAACTTGCGGCTATCCAGATGGCCGGGCAATGGCAGGGCAGGTGCCGTGGCCCTGCAGGCCCTCAAGGGCTCCCAGGACAGCTCAGAGAATGATCTGGTGCGAAGCCCCAAGTCGGCTGGCAGCAGAACCAGCAGCTCCGTCAGCAGCACCAGCGCCACGATCAACGGGGGCCTGCGCCGGGAACAACTGATGCACCAGGCTGTTGAGGACCTGCCAGAGGGCGTGGACCCTGCCCGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-'25-28,'25-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.375 C2=0.643
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.2=78.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCCACCTTCATTGGATG
R:
GGCTTCGCACCAGATCATTCT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)