GgaEX0008090 @ galGal4
Exon Skipping
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4588655-4591828:+
Coord C1 exon
chr2:4588655-4588843
Coord A exon
chr2:4590712-4590780
Coord C2 exon
chr2:4591580-4591828
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACGACTCTCTTTACTTTCAGGAT
3' ss Score
10.93
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATTTTCCTCTGGGTTGGCAAAGCCTCCAACACATATGAGAGGAATGAGGCGGTTGCCTCGGCTAAGGAGTATCTCAAGACCCATCCAGCAGGGAGAGACTTGGCAACTCCGATCATACTGGTGAAGCAGGGCTGTGAGCCCCTCAACTTCACAGGGTGGTTCAACGCTTGGGACCCCTACAAATGGAGT
Seq A exon
GATGGCAAATCCTATGAGGAGATGAAGAACAGCTTAGGAGATGTGTCGGCTCTATCTGAGATCACGGTG
Seq C2 exon
GACCTGAACAACATCAGCCTGAGCAAAAGAACCCTCAGCATGACCAATCTGACTGGTTCAAGCACATCAAGTGCTTCCCCGGAGTACAAATCGCACTTCAACCACAATGACAGCAGCAGCTACGCCAACAGCAGCGCCAACGGCAGCCCTTTCACAGTGCCCAGTGAAAAGGGAGTTTACTCCCGAGAGGTGCTGATGAACAAAACTGTGGATGAACTTCCAGAAGGAGTGGATCCCACTAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763-'26-22,'26-21,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.410
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(63.3=79.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACTGGTGAAGCAGGGCTG
R:
CGATTTGTACTCCGGGGAAGC
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]