DreEX0013118 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20769924-20776293:-
Coord C1 exon
chr17:20776108-20776293
Coord A exon
chr17:20774338-20774361
Coord C2 exon
chr17:20769924-20770022
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTCCTCGCGTCTCAACGTAGATG
3' ss Score
7.1
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GATGGCTTTACACCGTTAGCAGTAGCGCTACAGCAGGGTCACGATCAGGTGGTTTCTCTGTTGTTAGAGAATGACACAAAAGGTAAAGTCCGTCTGCCTGCGCTCCACATCGCTGCCCGTAAAGATGACACCAAATCCGCAGCTCTGCTTCTTCAGAATGACCACAATGCAGATGTCGAGTCCAAG
Seq A exon
ATGATGGTCAATAGAACAACAGAG
Seq C2 exon
AGTGGTTTCACTCCTCTCCACATCGCTGCACACTATGGAAACATCAACGTAGCGACACTCTTGTTAAACAGAGGAGCAGCGGTGGACTTCATGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.625 C2=0.020
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=50.0),PF127962=Ank_2=PU(26.7=43.5)
A:
PF127962=Ank_2=FE(6.9=100)
C2:
PF127962=Ank_2=PU(26.7=72.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCGCTGCCCGTAAAGATG
R:
AGCGATGTGGAGAGGAGTGAA
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]