DreEX0018697 @ danRer10
Exon Skipping
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4554542-4556963:-
Coord C1 exon
chr21:4556776-4556963
Coord A exon
chr21:4555689-4555788
Coord C2 exon
chr21:4554542-4554657
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCTTGTGTCTGCAGCGG
3' ss Score
9.85
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ACGAAAAGCGGAAGAGGATCGGGTGCGTAAAGAGGAAGAAAAGGCCCGCCGGGAGCTGATCAAACAGGAGTACCTGCGCAGGAAGCAGCAAGAGCTCCTGGAGGAACAGGGTGCCGCCAAACCCCGCCCACGAAACCGCAGGCCACGCCCCAAATCACTGCATCGAGCCGAATCGTCTTGCTCTGCCC
Seq A exon
CGGTCAGTCTCTGTTCCGCCCCGTCTGGGTCTTCTCTGTCATTGGCGTCTGCTGCTACTGAAGGTGACAGTGTGGCGTCAGGAGGAGCCAGTTCACACAG
Seq C2 exon
AGGGGAGTCAGTGGAGTCTTTCCCCATATTGAGTCGAAATGCAAGCCGAAACATGGAGCGAGACTGGGATAACGGCTCCACGGCCTCGTCCATCACATCTGTAGCAGAATACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208-'21-24,'21-22,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=0.705 C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGATCGGGTGCGTAAAGA
R:
CCCAGTCTCGCTCCATGTTTC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]