DreEX0018721 @ danRer10
Exon Skipping
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45513618-45521285:+
Coord C1 exon
chr2:45513618-45513838
Coord A exon
chr2:45517144-45517240
Coord C2 exon
chr2:45521176-45521285
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTTTATGTGTCCAGGGT
3' ss Score
7.38
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AATGAAAGTGGAAGAGGAACGTCAGAAGAAGGAGGACGAGAAGGCGAGACGGGAGTACATAAAACATGAGCATATGAGGAGGAAGCAGCTAAAACTGATGGAGGACATGGACAGTGTCATTAAGCCCAGTCCTTCTGGAGCCAAGCAGAAGAAGCCACGGCCCAAATCTATGCATAGAGACATCATGGAGTCTCCAAAACCTCCAGCACGGACAGCCACAG
Seq A exon
GGTCACGTCCTCGTGGATATTCTGTGTCCAGCATATCACTCGCCTCCCTGAACTTAGCAGACAATGAGAGCATCCAATCAGATAAGAGAACATCCAG
Seq C2 exon
GCCGGAGTCTGCAGAGGGCTTTCTGTCACCCTGTCCTTCTGTTAGTGGAAACGGGGAAAACTGGGAGCTGGAATCAACATCATCCGCAGCATCTAACACAGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965-'20-26,'20-23,22-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.916 C2=0.822
Domain overlap (PFAM):
C1:
PF052626=Borrelia_P83=FE(31.9=100)
A:
PF052626=Borrelia_P83=FE(13.8=100)
C2:
PF052626=Borrelia_P83=FE(15.9=100),PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTGGAGCCAAGCAGAAG
R:
GCGGATGATGTTGATTCCAGC
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]