DreEX0021836 @ danRer10
Exon Skipping
Gene
ENSDARG00000089781 | ciz1a
Description
cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
Coordinates
chr5:1190490-1196607:-
Coord C1 exon
chr5:1196514-1196607
Coord A exon
chr5:1193278-1193391
Coord C2 exon
chr5:1190490-1190606
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGGGGGTGCAGCGC
3' ss Score
4.63
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
TGAGAAGAGGCCTGGTCTGCAGAGATGGTGCTCCACCTGCCAGACTCACTTCACCAGCAACGTCATGGAGCACCGCAGAACCAAGGAGCACAAG
Seq A exon
CGCTTCAGTCGCTCCTCCAGCAGCAGTTGTACCGTCTGTAAGCTGAACTTCAGGACGGCCAGAGAGTTTGTGGAGCACATGCAGTCGGCGGAGCACAAGCAGAGAGTCCAGCAG
Seq C2 exon
CTGTGGAAGGAGTCTGGCTCCGGTTCTGTAGAGGAACTGAACACTGTGATGTTACTGGGAGAAGACGATGGAGAATTCTGCAGCGACGATGAGCGCGAGGATGAGGAGAACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089781_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.280 C2=0.462
Domain overlap (PFAM):
C1:
PF049887=AKAP95=FE(21.4=100)
A:
PF049887=AKAP95=FE(25.5=100),PF127562=zf-C2H2_2=PU(78.6=86.8),PF049887=AKAP95=PU(19.0=78.9)
C2:
PF049887=AKAP95=PD(11.0=41.0),PF127562=zf-C2H2_2=PD(16.7=17.9),PF049887=AKAP95=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAGGCCTGGTCTGCAG
R:
CTTGCCGTTCTCCTCATCCTC
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]