HsaEX0015441 @ hg19
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130931355-130932386:-
Coord C1 exon
chr9:130932299-130932386
Coord A exon
chr9:130931685-130931798
Coord C2 exon
chr9:130931355-130931480
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTGGCCTGCCTTTTTCCAGATT
3' ss Score
8.82
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
Seq A exon
ATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAG
Seq C2 exon
CTGAAGTCGCTTGAGAAAGAAATTGCTGGCCAAGATGAGGACCACTTCATTACAGTGGACGCTGTGGGTTGCTTCGAGGGTGATGAAGAAGAGGAAGAGGATGATGAGGATGAAGAAGAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'39-41,'39-37,41-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.126 C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCGCTGGTGCAACA
R:
TCGATCTCTTCTTCATCCTCATCA
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)