DreEX6014153 @ danRer10
Exon Skipping
Gene
ENSDARG00000089461 | ciz1b
Description
cdkn1a interacting zinc finger protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2933]
Coordinates
chr5:62972476-62976475:-
Coord C1 exon
chr5:62976382-62976475
Coord A exon
chr5:62974621-62974734
Coord C2 exon
chr5:62972476-62972601
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTGTCTCCACATTAGATG
3' ss Score
5.75
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
AGAAAGGAGGACGGGTAATCAGCGCTGGTGTCCAACCTGCCAGTGTTATTTTACTGGTGACCTCATTGAGCACAGACGGACAAACAAACACAAG
Seq A exon
ATGGCAAAAGTGTCCTCAAGACCTTTCTGTACCCTGTGTGAGCGCCACTTTAGGACTCCTCGCAAGTTTGTGGAGCATATGAAGTCTTCCGAGCACAAACGGAGAGTTGAAGAG
Seq C2 exon
TTAAGACACGAGGGTGACCCAGAGGTTATGGAGGAACTCATAACAGTGGATGCTGTTGGCTGCTTTGAGGGGGAAGACGATTACGAGGAGGATGGAAATGAAGAAGAGTTTGCGGTGTTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089461-'8-11,'8-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.342 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAGGACGGGTAATCAGC
R:
CTTCTCAAACACCGCAAACTCT
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]