RnoEX0021395 @ rn6
Exon Skipping
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11404583-11405501:+
Coord C1 exon
chr3:11404583-11404670
Coord A exon
chr3:11405089-11405202
Coord C2 exon
chr3:11405346-11405501
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCCACCTGCCCCTCCCCAGGTT
3' ss Score
8.99
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATCCTCCACCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACATGGGAGACCTGATCCAGCACCGCAGGACACAGGAGCACAAG
Seq A exon
GTTGCCAAGCAGTCCCTGAGGCCCTTCTGCACCATATGCAACCGTTATTTCAAGACCCCTCGAAAGTTTGTGGAGCATGTGAAGTCCCAGGGACACAAGGACAAGGCCCAGGAG
Seq C2 exon
CTGAAGACACTTGAAAAAGAGACAGGCAGCCCAGATGAGGACCACTTCATCACCGTGGACGCCGTTGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGATGATGAAGAAGAGGAAGAAGAGATTGAGGCGGAGGAGGAATTCTGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-'18-30,'18-28,19-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.263 C2=0.718
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCTCCACCCAAACGCT
R:
GCTTGCAGAATTCCTCCTCCG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]