MmuEX6100542 @ mm9
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32231005-32231947:+
Coord C1 exon
chr2:32231005-32231092
Coord A exon
chr2:32231529-32231642
Coord C2 exon
chr2:32231786-32231947
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCTACCTGCCTTTCCCCAGGTT
3' ss Score
10.07
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATCCTCCGCCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACGTGGGAGACTTGATCCAGCACCGTAGGACACAGGAGCACAAG
Seq A exon
GTTGCCAAACAATCCCTGAGGCCCTTCTGCACCATATGCAACCGTTACTTCAAGACCCCTCGAAAGTTTGTGGAGCACGTGAAGTCCCAGGGACACAAGGACAAGGCCCAAGAG
Seq C2 exon
CTGAAGACACTTGAAAAGGAGACAGGCAGCCCAGATGAGGACCACTTCATCACTGTGGACGCCGTCGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGACGACGAGGAAGAAGAAGAAGAAGGAGAGATTGAGGCTGAGGAGGAATTCTGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-'33-37,'33-36,34-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.254 C2=0.745
Domain overlap (PFAM):
C1:
PF049887=AKAP95=PD(0.1=0.0)
A:
PF121713=zf-C2H2_jaz=WD(100=71.1),PF052857=SDA1=PU(12.3=52.6)
C2:
PF052857=SDA1=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTCCGCCCAAACGC
R:
TGCAGAATTCCTCCTCAGCCT
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: