MmuEX6100542 @ mm10
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32375485-32376427:+
Coord C1 exon
chr2:32375485-32375572
Coord A exon
chr2:32376009-32376122
Coord C2 exon
chr2:32376266-32376427
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCTACCTGCCTTTCCCCAGGTT
3' ss Score
10.07
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGATCCTCCGCCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACGTGGGAGACTTGATCCAGCACCGTAGGACACAGGAGCACAAG
Seq A exon
GTTGCCAAACAATCCCTGAGGCCCTTCTGCACCATATGCAACCGTTACTTCAAGACCCCTCGAAAGTTTGTGGAGCACGTGAAGTCCCAGGGACACAAGGACAAGGCCCAAGAG
Seq C2 exon
CTGAAGACACTTGAAAAGGAGACAGGCAGCCCAGATGAGGACCACTTCATCACTGTGGACGCCGTCGGTTGCTTTGAGAGTGGTCAAGAAGAGGACGAGGATGACGACGAGGAAGAAGAAGAAGAAGGAGAGATTGAGGCTGAGGAGGAATTCTGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-'36-59,'36-53,37-59=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.252 C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=71.1),PF052857=SDA1=PU(12.3=52.6)
C2:
PF052857=SDA1=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTCCGCCCAAACGC
R:
TGCAGAATTCCTCCTCAGCCT
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types