BtaEX0009091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98809215-98810257:-
Coord C1 exon
chr11:98810170-98810257
Coord A exon
chr11:98809561-98809674
Coord C2 exon
chr11:98809215-98809364
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCTTCCATTCCTCAGTTC
3' ss Score
7.87
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGAGCCTCCACCCAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAGCACCGCAGGACGCAGGACCACAAG
Seq A exon
TTCGCCAAACAATCCCTGCGACCTTTCTGCACCATTTGCAACCGCTACTTCAAGACCCCCCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGCCATAAGGACAAAGCCAATGAG
Seq C2 exon
CTGAAGACACTGGAGAAGGATATAGCCGGCCAAGACGAGGACCACTTCATCACGGTGGATGCTGTGGGCTGCTTTGAGGGCGATGAAGAAGAGGAGGAGGATGACGAGGAGGAAGAAGAGATCGAGGCTGAGGAGGAATTCTGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.184 C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000016302fB1735
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCGCTGGTGCAACAC
R:
CTGCTTGCAGAATTCCTCCTCA
Band lengths:
226-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development