GgaEX6015063 @ galGal3
Exon Skipping
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5719028-5720313:+
Coord C1 exon
chr17:5719028-5719112
Coord A exon
chr17:5719723-5719836
Coord C2 exon
chr17:5720128-5720313
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCCCTCTCTCTTTAGCTG
3' ss Score
11.45
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAGACCCAGCAGCGGTGGTGTAACACTTGTCAGATACACTTCACAGGGGATCTGATCAAACATCGCAGGACCCAAGAACACAAG
Seq A exon
CTGGCCAAACGCTCACTTCGTCCTTTCTGCACTGTCTGCAGCCGCCATTTCAAGACCCCTCGCAAGTTCGTGGAGCATATGAAGTCCCCTGAGCATAAACAGAAAGCCAAAGAG
Seq C2 exon
GTGAGACTGGGAGAGAAGGAGTTGGGCAGCCCAGAAGATTCAGAGGAGTTGATCACAGTGGATGCTGTTGGCTGCTTTGAAGATGATGAAGAGGAGGAAGAGGAGGAGGAAGAAGAGGAGGGAACTGGTGAGGGGGAAGACCTTGATGTAGTGCTGGTAGAGAATGAGGACTCTGCTGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.412 C2=0.839
Domain overlap (PFAM):
C1:
PF049887=AKAP95=FE(11.7=100)
A:
PF121713=zf-C2H2_jaz=WD(100=71.1),PF0105613=Myc_N=PU(14.7=36.8)
C2:
PF0105613=Myc_N=FE(64.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGTGTAACACTTGTCA
R:
TGGCAGCAGAGTCCTCATTCT
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]