HsaEX0015441 @ hg38
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128169076-128170107:-
Coord C1 exon
chr9:128170020-128170107
Coord A exon
chr9:128169406-128169519
Coord C2 exon
chr9:128169076-128169201
Length
114 bp
Sequences
Splice sites
3' ss Seq
GTTGGCCTGCCTTTTTCCAGATT
3' ss Score
8.82
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
Seq A exon
ATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAG
Seq C2 exon
CTGAAGTCGCTTGAGAAAGAAATTGCTGGCCAAGATGAGGACCACTTCATTACAGTGGACGCTGTGGGTTGCTTCGAGGGTGATGAAGAAGAGGAAGAGGATGATGAGGATGAAGAAGAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'58-93,'58-90,62-93
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.123 C2=0.461
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCGCTGGTGCAACA
R:
TCGATCTCTTCTTCATCCTCATCA
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development