DreEX0022123 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66535762-66549953:-
Coord C1 exon
chr5:66549893-66549953
Coord A exon
chr5:66539107-66539997
Coord C2 exon
chr5:66535762-66535857
Length
891 bp
Sequences
Splice sites
3' ss Seq
TAATTTACTTCTTCTTTTAGGTG
3' ss Score
10.3
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAGGTGGAGGACCTGCAGTTTCGAGTGGAGGAGGCTTGCATTACCAAAGGAGATTTGGAG
Seq A exon
GTGGCCACAGTCTCAGAGAAGTCCCGCATTTTGGAGTTGGAGCGGGATCTTTCTATGAAGGACAAGGAGTCGGCAGCTCTCCGCAAGTCATTGGAAGCGTTATCAAGTCAGGATGGGGTTTGTGACTCTGCCGTGGCCGCTCTGCAGGAGCAGCTCAGTTTGATCCGTTCCCAGCAGGCCGAGCAAAGCCACAGTCACCAAGCAGAGCTGTCCTCCATGCGCGAGAAGCTTGAGGCGCAAGAAAAAGCACACCGTGAAGCCCTGATGCACCTCCAGGCCTCCTCAAGTCGCCTATCTAAGGATAACGAGCAGCTTTTAGCTGAGCTTGCAAAATCGAAAGAAGAAAACTCGAATGTTGTTGAGCAGTGGAGCGATAAACTCAAATCCGTTGAGGCTTCACATCAGCAAGCTTTGGAGGAGCTCAAAACCTCCCGTGAAGCAAGCAAAGCTGAATTGTCGGATGCTCTGGAACGGCTAAAATCAACACATAAGCTGGAGTTGGAGGAGCTCGCTAAGAAACATTCCTCTGAAGCAGCGGGATGGGTGGGTGAAGGTATGGAGCATAAAGCACAGCTTCTGAAAGTCGCCGAAGAGAATGAACGGCAGGTAGAAATGCTCCGCAGCAGTCTGGAGAAGGCCGAGGAGCAGCACCTAGTGGAGCTGGAGGACGCCATGGGGAAGCTTCATGCCGCGGAGCTCAGGGTCAAAGAGCTGGAGGACAGCGGAGTCAAGATAAGCGAGCAGTTAAAGGAAAAGGTGCAAGAAGCTCTCGAGCAAAGTGAAGCTCTTCAGTCTCTGCAGACACAGCACAGTCAAGGAAACCAGGAGATGCAGAGGTTATTGAGCCAAGTGGAGGAGGCGAAAAGCAAAGCCAGATCTCAGGAAGAAAAG
Seq C2 exon
GTCACTGAGTTGAATTCAGTACTAGAGGTTAAACAGCAGGAGTTGAGTGGCCTGTTGCAGGAAAAGAGCTCTTTGGAGCAAGAAGTTAGCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.694 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]