GgaEX1015735 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5890309-5895764:-
Coord C1 exon
chr15:5895660-5895764
Coord A exon
chr15:5891805-5892731
Coord C2 exon
chr15:5890309-5890425
Length
927 bp
Sequences
Splice sites
3' ss Seq
TGAAATGCTGTTAATCATAGGTG
3' ss Score
5.75
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
Seq A exon
GTGGCTACAGTATCAGAAAAATCTCGCATCATGGAACTAGAAAGAGATCTAGCATTGCGGGTGAAGGAAGTAGCTGAGCTTCGAGGGAGATTAGAGTCTAGTAAACACATTGATGATGTGGATACTTCTCTTTCATTGTTACAAGAAATAAGTTCTTTGCAAGAAAAAATGGCAGCAGCTGGCAAAGAGCATCAGCGAGAGATGAGCTCTCTGAAAGAGAAGTTTGAAAGCAGTGAAGAAGCGCTGCGGAAAGAGATCAAAACACTTTCAGCTTCAAATGAGAGAATGGGAAAAGAAAACGAATCATTGAAAACTAAGCTTGATCATGCCAACAAAGAGAATTCAGACGTAATAGAGCTGTGGAAATCGAAGCTGGAATCTGCAATTGCTTCCCATCAGCAAGCAATGGAAGAACTGAAAGTTTCTTTCAACAAAGGTGTAGGGGCTCAGACAGCAGAATTTGCAGAGTTAAAAACTCAGATGGAGAAGGTTAAATTAGACTACGAAAATGAAATGTCAAATCTAAAACTGAAGCAGGAAAATGAAAAATCTCAGCATTTAAAGGAGATTGAAGCACTGAAGGCAAAATTGCTGGAGGTCACAGAGGAGAAAGAGCAAACCCTGGAAAACCTGAAGGCCAAACTGGAAAGTGTGGAAGATCAGCATCTAGTAGAAATGGAAGACACTTTAAACAAATTACAGGAAGCTGAAATAAAGGTAAAGGAGCTAGATGTACTGCAAGCCAAGTGCAATGAACAAACCAAACTTATTGGTAGTCTTACACAACAGATCAGAGCTTCTGAAGAAAAGCTTTTGGACCTTGCTGCACTTCAGAAAGCCAATTCTGAAGGTAAATTGGAAATCCAGAAACTTAGCGAGCAGCTTCAGGCAGCTGAGAAACAGATACAGAATTTAGAGACTGAAAAG
Seq C2 exon
GTTAGTAATCTGACCAAAGAACTGCAGGGCAAAGAGCAAAAGCTTCTTGACCTTGAGAAAAATTTGAGTGCAGTAAATCAAGTTAAAGATTCTTTGGAAAAGGAACTTCAACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-'15-13,'15-12,17-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.267 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGACCAAACTGGAGCAT
R:
CAAAAGTTGAAGTTCCTTTTCCAAA
Band lengths:
222-1149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]