RnoEX0021786 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38395527-38407202:+
Coord C1 exon
chr12:38395527-38395631
Coord A exon
chr12:38399702-38400418
Coord C2 exon
chr12:38407145-38407202
Length
717 bp
Sequences
Splice sites
3' ss Seq
CTTATGACCACTGTCACTAGGTG
3' ss Score
5.43
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
Seq A exon
GTGGCTACAGTATCAGAAAAGTCCCGAATAATGGAACTAGAAAAGGACCTAGCGTTGAGAGTACAGGAAGTAGCTGAGCTCCGAAGAAGGCTAGAGTCCAGTAAACCTCCCGGAGATGTGGATATGTCTCTTTCTCTTTTGCAAGAAATCAGTGCTTTGCAAGAAAAGCTAGAAGTCACACATACTGACCACCAGAACGAGGTGACGTCTCTGAAGGACCACTTTGGAACTCGGGAAGAGATGTTTCAGAAGGAGATCAAGGCTCTGCACGCTGCCACTGAAAAGCTCTCCAAAGAGAACGAGTCCTTGAGGAGCAAGCTTGACCATGCCAACAAGGAGAACTCAGACGTCATCGCTCTGTGGAAGTCCAAACTGGAGACCGCCATCGCGTCCCACCAGCAGGCAATGGAGGAGCTGAAGGTGTCCTTTAGCAAAGGGATTGGAACTGACTCGGCTGAGTTTGCTGAGTTAAAGACACAGATAGAGAGACTCAGACTAGATTACCAGCACGAAATAGAAAGTTTACAGAGTAAGCAGGACTCCGAACGGTCTGCCCATGCTAAAGAGATGGAGTCCATGAAGGCCAAGCTGATGAAGATCATCAAAGAGAAGGAGGACAGCCTGGAGGCCGTCAAAGCACGGCTGGACACGGCGGAAGACCAGCACCTGGTGGAGATGGAGGAGATGCTCAGCAAGCTGCAGGAGGCAGAGATTAAG
Seq C2 exon
AAAGAAAAGTTTGCCAGCGCTTCAGAGGAGGCCGTCTCTACTCAGACAAGTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247-'27-22,'27-18,28-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.307 A=0.430 C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
PF0157614=Myosin_tail_1=PU(66.2=82.8),PF0017016=bZIP_1=WD(100=16.3)
C2:
PF0157614=Myosin_tail_1=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]