DreEX0023329 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50700596-50701255:-
Coord C1 exon
chr7:50701121-50701255
Coord A exon
chr7:50700889-50700933
Coord C2 exon
chr7:50700596-50700712
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTACATATTTTCTGACAGGGT
3' ss Score
9.04
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGGCAACCAGGAGAACTTGGACCAGTGGGCAGCGGTGGTCCTGAGGGTTTCTATGGGGGCCCGGGACCAGTTGGGCCAAAAGCAGAGCAGGGCCATATAGGACGTAAAGGTCCTCCTGGACAAAATGGAGATAAG
Seq A exon
GGTCCAATGGGTGTTCCTGGTTATCCCGGTAATGATGGTGTTCCT
Seq C2 exon
GGACACCCTGGTCAGGAGGGGCCCAGGGGGCCTCCAGGTCTGGATGGGTGTAATGGCACACAAGGGGACACTGGTTACAGCGGCCTTGATGGGTATTCTGGTATTCCTGGTTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061-'4-8,'4-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(68.8=100)
A:
PF0139113=Collagen=FE(21.9=100),PF0139113=Collagen=PU(11.5=46.7)
C2:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(62.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGCAGAGCAGGGCCATA
R:
GCTGTAACCAGTGTCCCCTTG
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]