RnoEX6026587 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112467973-112473822:-
Coord C1 exon
chrX:112473688-112473822
Coord A exon
chrX:112470294-112470338
Coord C2 exon
chrX:112467973-112468089
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCTCCTTTCTTTAGGGT
3' ss Score
12.94
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGGCACACTGGGCCAATTGGAACTCAAGGTCCAGCCGGTCCTGAAGGGTTTGCTGGTCCAACTGGTTTATCAGGGTTGAAAGGAGAAAGAGGCTCCCCAGGCCGTCTGGGACCATATGGACCCAAAGGAGATAAG
Seq A exon
GGTCCCATTGGAGTTCCTGGCTTTGTTGGCATCAGTGGGATTCCG
Seq C2 exon
GGACACCCAGGCCAACCAGGTCCAAGAGGTCCACCTGGCCTAGATGGATGTAATGGAACTCAAGGAGCTGTTGGATTTCCAGGCACTGATGGCTACCCTGGGGTTTTAGGACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(73.3=97.8)
A:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=PU(10.0=40.0)
C2:
PF0139113=Collagen=FE(63.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGAAGGGTTTGCTGGTC
R:
GTGGACCTCTTGGACCTGGTT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]