BtaEX0009713 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61113657-61125754:-
Coord C1 exon
chrX:61125614-61125754
Coord A exon
chrX:61124222-61124266
Coord C2 exon
chrX:61113657-61113773
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATTCCTACTGTTTTTTTTAGGGT
3' ss Score
10.29
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TCTCAGGGGAGACCAGGACCAATTGGAATTCAAGGTCCAACAGGTCCTCAAGGACTTCCTGGCCCTAGTGGTTTATCAGGGTTAAAAGGAGAAAGGGGCTCCCCAGGCCCGCTGGGACCGTATGGACCAAAAGGCGATAAG
Seq A exon
GGTCCCATGGGTGTTCCCGGCTTTCTTGGCATCAATGGAATTCCA
Seq C2 exon
GGCCACCCTGGACAGCCAGGACCCAGAGGCCCACCTGGCCTGGATGGCTGTAATGGAACTCAAGGAGCTGTTGGATTTCCAGGCCCTGATGGCTATTCTGGGCTTCCTGGACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(74.2=97.9)
A:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(13.1=53.3)
C2:
PF0139113=Collagen=FE(62.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTATGGACCAAAAGGCGAT
R:
TGGTCCAGGAAGCCCAGAATA
Band lengths:
138-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development