GgaEX6033665 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14020105-14027809:+
Coord C1 exon
chr4:14020105-14020239
Coord A exon
chr4:14022309-14022353
Coord C2 exon
chr4:14027693-14027809
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCATTTTCATTTCAGGGT
3' ss Score
10.51
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGTCGACCAGGACCAATTGGGATTCAAGGACCAATAGGTGCTCCTGGATTTACTGGTCCAGAGGGTTTGCCAGGAGCAAAAGGTGAGAGAGGAGCAGTGGGCCCCCCTGGACCAGCTGGACACAAAGGCAACAAG
Seq A exon
GGTTCAATGGGAGTTCCAGGATTTCAAGGCATCAATGGGATTCCA
Seq C2 exon
GGTCACCCTGGCCAGTCTGGACCCAGGGGTCCACCTGGCCTCGATGGCTGCAATGGAACCATCGGGAGTCCTGGTGTTTCTGGGCCAGATGGATTTCCTGGCATACCCGGGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'25-8,'25-7,27-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(55.9=84.4),PF0139113=Collagen=FE(62.0=100)
A:
PF0139113=Collagen=PD(17.7=73.3),PF0139113=Collagen=PU(12.1=53.3)
C2:
PF0139113=Collagen=PD(16.2=46.2),PF0139113=Collagen=FE(58.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAGCAAAAGGTGAGAG
R:
AGGACTCCCGATGGTTCCATT
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]