MmuEX6046129 @ mm10
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:141227799-141234208:-
Coord C1 exon
chrX:141234074-141234208
Coord A exon
chrX:141232449-141232493
Coord C2 exon
chrX:141227799-141227915
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCCTTTTTTAGGGT
3' ss Score
13.51
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGGCACCCTGGACCAATTGGAACTCAAGGTCCAGCCGGTCCGGAAGGGTTTACTGGTCCAACTGGTTTATCAGGTTTGAAAGGAGAAAGAGGCTCCCCAGGCCCTCTGGGACCATATGGATCAAAAGGAGATAAG
Seq A exon
GGTCCCATTGGAGTTCCTGGCTTTGTTGGCATCAGTGGTATTCCG
Seq C2 exon
GGCCACCCTGGACAGCCAGGTCCAAGAGGTCCACCTGGCCCAGATGGCTGTAATGGAACTCAAGGAGCTGTTGGATTTCCAGGCCCTGATGGCTACCCTGGGATTTTAGGACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.933 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(71.0=100)
A:
PF0139113=Collagen=PD(17.7=73.3),PF0139113=Collagen=PU(12.9=53.3)
C2:
PF0139113=Collagen=FE(61.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAGAGGCTCCCCAGG
R:
CAGGGCCTGGAAATCCAACAG
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types