GgaEX6033665 @ galGal3
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
NA
Coordinates
chr4:14169851-14177555:+
Coord C1 exon
chr4:14169851-14169985
Coord A exon
chr4:14172055-14172099
Coord C2 exon
chr4:14177439-14177555
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCATTTTCATTTCAGGGT
3' ss Score
10.51
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGTCGACCAGGACCAATTGGGATTCAAGGACCAATAGGTGCTCCTGGATTTACTGGTCCAGAGGGTTTGCCAGGAGCAAAAGGTGAGAGAGGAGCAGTGGGCCCCCCTGGACCAGCTGGACACAAAGGCAACAAG
Seq A exon
GGTTCAATGGGAGTTCCAGGATTTCAAGGCATCAATGGGATTCCA
Seq C2 exon
GGTCACCCTGGCCAGTCTGGACCCAGGGGTCCACCTGGCCTCGATGGCTGCAATGGAACCATCGGGAGTCCTGGTGTTTCTGGGCCAGATGGATTTCCTGGCATACCCGGGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(72.1=97.8)
A:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=PU(9.4=40.0)
C2:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(59.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAGCAAAAGGTGAGAG
R:
AGGACTCCCGATGGTTCCATT
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]