MmuEX6046129 @ mm9
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:137662342-137668751:-
Coord C1 exon
chrX:137668617-137668751
Coord A exon
chrX:137666992-137667036
Coord C2 exon
chrX:137662342-137662458
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCCTTTTTTAGGGT
3' ss Score
13.51
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGGCACCCTGGACCAATTGGAACTCAAGGTCCAGCCGGTCCGGAAGGGTTTACTGGTCCAACTGGTTTATCAGGTTTGAAAGGAGAAAGAGGCTCCCCAGGCCCTCTGGGACCATATGGATCAAAAGGAGATAAG
Seq A exon
GGTCCCATTGGAGTTCCTGGCTTTGTTGGCATCAGTGGTATTCCG
Seq C2 exon
GGCCACCCTGGACAGCCAGGTCCAAGAGGTCCACCTGGCCCAGATGGCTGTAATGGAACTCAAGGAGCTGTTGGATTTCCAGGCCCTGATGGCTACCCTGGGATTTTAGGACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.950 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(73.3=100)
A:
PF0139113=Collagen=PD(15.0=60.0),PF0139113=Collagen=PU(12.9=53.3)
C2:
PF0139113=Collagen=PD(2.9=5.1),PF0139113=Collagen=FE(61.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAGAGGCTCCCCAGG
R:
CAGGGCCTGGAAATCCAACAG
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: