DreEX0030260 @ danRer10
Exon Skipping
Gene
ENSDARG00000060054 | epc1b
Description
enhancer of polycomb homolog 1 (Drosophila) b [Source:ZFIN;Acc:ZDB-GENE-090609-1]
Coordinates
chr2:43782854-43786600:+
Coord C1 exon
chr2:43782854-43782986
Coord A exon
chr2:43783072-43783414
Coord C2 exon
chr2:43785366-43786600
Length
343 bp
Sequences
Splice sites
3' ss Seq
AACTCTTCTCATCTGCACAGGCG
3' ss Score
7.79
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTTTGGTGTCAAAGACGATAGACGCTGCCAGCGCTCAGTTTGCTGCATCTGCATTAGTAACTCATGAGCAGCTGTTGGCGCTCAAGAGTAAAGATGAGGGAGTTGGTGTTAATGGAGTCGTCTCAGCATCAG
Seq A exon
GCGTCTACAAGGGCTTACATCACACGAGCTCTGCGGTGTCGTCCATCCTTCCATCTGTCGGCTCTACCTCCACCTCTTGCCCCTCCCCCACCATCGCCACCACCACTAACAACGGCACCTCCTCGGCCAATCACCATGTGGGCCCGGCTGGCCCCGCCCCTGGCCAAGCGCTAATGGGCGGGGCCGTGCGAGTGAGCGTGCCATCACCAGCAGGCACCCTGAGTGTGCGCCAGCTGCAGCGCCAGCTCACTGTTCCCGCCTCAGCCCTAAAACTCGCTGCCAACGCCAACAGACCGCTCCCAAAGGTCACCACAGGGTCAACTACCCTCGACATGGGCCCCAG
Seq C2 exon
GGAGAATCACGATCAAGAGAAGCCTCCGTTGAACAGTCTAACAGAGAACACAGTGGCGATGGAGGTGACGTAGCGCTGCTCTGTGTCCACGCGTCTCCTTTAGGTGCTATGCATCGTAGCGACGCTGTTTTCATGGCAGCCGTTGGGACTTAATTGCAATGCTCATCTTTTTTTTGTTGTTTTCTTTCTTTTTTTTCTGAAATTTTGTTACTGTTAAATATCAACATCTGTAAATTATGAGATATGGAAAATATTCTATGTACATACATATTTGTAATACACCCCTCCCCCCCTCCCCCACTTGTATATAACATTACTTGAATACAGAATTCATTTGTGATGTTTTGCACTTGGGAAAAAAAATCTGAAAAAAAAGAACTGCGATTTTCGTAGTGTGTGTGCCGTTTGTGCGCGTGTGTGTGAATGTTCAAGTGTTTGTGAGACTGTATCTGAATGTATGTCACATGCATGGTGCAAAACCTGCTGTTTTATCTATTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060054-'12-16,'12-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(19.7=100)
A:
PF067527=E_Pc_C=FE(51.1=100)
C2:
PF067527=E_Pc_C=PD(10.3=92.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGGCGCTCAAGAGTAA
R:
GGGGGAGGGGTGTATTACAAA
Band lengths:
353-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]