DreEX0032788 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:752176-756581:+
Coord C1 exon
chr19:752176-752523
Coord A exon
chr19:754371-755200
Coord C2 exon
chr19:756423-756581
Length
830 bp
Sequences
Splice sites
3' ss Seq
GTCGCTCTGTGTTTCTGCAGGTC
3' ss Score
11.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACACTAATGATCTAGAACCGGAAGCAGAGGCTGATCTAGAACCCGAGGAGAAAAAGCCCACAGAAGAAGCAGAGGAGGAAGTAGAAGAGGAAGTAGAGGAGGAAGTAGAAGAGGGAGTGAGTGCTGAACCGGAAGTGAGCGCAGCTGAGGAACAGGTGGCAGAGGAGGAGGAGGAGTCTGAGCGGGAAGCGCCGGATGGAGAAGCGGAGGACAGTGGAATACTGAGCGATAAAGAGCGACAGAATGAAGAAGTGAACGAGAAAGACAACTGCTCTGCGTCCAGCATATCCTCCGCCAGCAGCACGCTAGAGAGAGAAGATCGACTCAATGCAGGCGCCGCAGACACAG
Seq A exon
GTCAGTGGAACGTGAATGAACAGCGACACAAGATCCTGGACAGCAAACTCTTCATGCTGGACATGCTGTACTCTCAGAGCAAAAAGCCCTGCGAGGAGGACGAGGATGAGGATGAAGAGCTGGCGGAGGATAAGGAGGCAGACGGAGAAGAGAAAGAACCGGACGAAGATTCAGCGACAGCGCCGGACGAAAACACCGAAGCAGACAAGAAGCAGGAGACCCAGAGTAACGTTCGGGCGTTCGCTGAGCGCTTCGGGGACGTGGTGAAAGGTTTGACCTCTCCACCAATAGAATTGCAGGATCTGCCTCCTCCTCCTCCTCCACCACCACCGAAGAAGGAGTCAGACTGTATTTGGGATCAGCTGATGGCGAGTCCGAGAGATCTGCGTATCGGTGATATCGACTTCACTGATTTAGGAGATGAAGATGATCAGGATGTGTTGGATTCTGGGAGTTTATATAGCTCTGGAGACCTTCAGGCTCCGCCCCCTCCTCCCCCACCCTGCCCCTTTAACCTCCCGGCTCCGCCCCCTATGTTCGGCTGTCCTCCGCCCCCTCCCGTCTTCAGCATACGTGTGCCTCCGCCCCCTCCCTGCTTCTCCAACCAGGCTCCGCCCCCTCCGGAGATGAAGGCGGAGCTTCCACTCTTCCAGAAGAAGAAGAAGACCATCCGACTGTTCTGGAGTGAAGTTCAGCCTGCAGACTGGATCTACCGGAACCACAAGCGCAGCCAGGAGTCGCTGTGGTCCAGACTCGAACCTGTCAAAATCGACACCGCTAAACTTGAACATCTGTTTGAGAGCAAATCCAAAGAGATGCCTGTCGCTAAG
Seq C2 exon
AAAGCAGCAGCAGACGGGAAGCGTCCAGAGATCATTGTTTTAGACTCCAAACGCAGTAACTCCATCAACATCGGCCTGACAGTTCTTCCTCCGCCGCGCACCATCAAAACTGCCATCGTCAACTTCGATGAGTACGCGCTCAACAAAGAGGGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'17-25,'17-24,19-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.758 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.0=22.7)
C2:
PF0218118=FH2=FE(14.0=100)
Main Skipping Isoform:
ENSDART00000093281fB2761
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTGAACCGGAAGTGAG
R:
GATGGCAGTTTTGATGGTGCG
Band lengths:
347-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]