DreEX0033110 @ danRer10
Exon Skipping
Gene
ENSDARG00000075041 | fmnl2b
Description
formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
Coordinates
chr6:13156754-13162285:-
Coord C1 exon
chr6:13162162-13162285
Coord A exon
chr6:13161813-13161928
Coord C2 exon
chr6:13156754-13157891
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGGCTATTGTTTTGCTGCAGTGC
3' ss Score
7.07
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
TCGCCGTCTCACAAGGGTAAGCGGCAGCAGCAAGAGCTTATTCACGAGCTAAGAAAGAGACAAGGCAAAGACAGCCGCCTTGTTTATGAAGGCAAAGATGGAGCCATCGAGGACATCATTACGG
Seq A exon
TGCTGAAGACCGCCCCTTTTACCGCTCGATCAGCCAAACGCGGCTCGCGGTTCTTCTGTGATCCCGCTCTCTCCGAGGACTTCCATTACTAAACTAAACTCTGTCCCCTCAGAAAG
Seq C2 exon
ACCTGCGCAACCAACCCTTCAGACGGGCTGATGCCCTCAGAAGGAGCGGGAGAAGAAACTTAGAGGTGCAGCACCTTCAGCTACGGACCGTGGAGATCAGCACATGCTAGCCACCATTGTTCAGCTTTTGAATCTACTGAAAACAACACACACAAACACACACACAAAAGCACACTTCAGACCAAGGATAGATGGAGAAATGTGACACGAACACTTCTGTTTACCTGGGATCTGGAATCTCGATTTAATGGACTGTTTTATGTTGGAGAGAACAATGAATATTGTGAATCCTACAAATGGACGATGAGCTAGCAAATGATTTAAGACATTTGGGTTTTATTTCCACGAAAGAGCAGAATGAGGTCTTGGATTTTGGCCTACTTGTGTCGTTTTACCACCGTTTTAAAGCTGCGGGTTTTTCTGAGGGGAAGAGTTACAAGATGCACTTTTATTTTTTATCTTTAAACATTGAACTCGGATCATCTCAACTGGACTTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075041_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=0.000 C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCACAAGGGTAAGCGGC
R:
AGCTGAACAATGGTGGCTAGC
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]