DreEX0034080 @ danRer10
Exon Skipping
Gene
ENSDARG00000015537 | gad2
Description
glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
Coordinates
chr24:6124166-6126511:-
Coord C1 exon
chr24:6126399-6126511
Coord A exon
chr24:6125760-6125875
Coord C2 exon
chr24:6124166-6124245
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTATTGTCCTCTAGGTG
3' ss Score
11.72
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTTCACCTATGAGGTGGCTCCAGTCTTCGTGCTGTTGGAATACGTCACGCTGAAGAAGATGAGGGAGATCATTGGCTGGCAGGACGGCCACGGTGATGGAATATTCTCTCCGG
Seq A exon
GTGGCGCCATTTCCAACATGTATGCCATGCTACTGGCTCGCTATAAAATGTTCCCTGAGGTGAAGGAGAAAGGAATGTCATCCGTACCTAGGCTGGTGGCCTTCACATCAGAACAT
Seq C2 exon
AGCCATTTTTCAATCAAGAAAGGAGCAGCTGCTCTTGGAATCGGTACAGAGAGTGTCATTTGCATTAAAGCTGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015537-'12-8,'12-7,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGAGGTGGCTCCAGTCT
R:
TCTCATCAGCTTTAATGCAAATGACA
Band lengths:
187-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]