MmuEX6099240 @ mm9
Exon Skipping
Gene
ENSMUSG00000026787 | Gad2
Description
glutamic acid decarboxylase 2 [Source:MGI Symbol;Acc:MGI:95634]
Coordinates
chr2:22485468-22505828:+
Coord C1 exon
chr2:22485468-22485580
Coord A exon
chr2:22490450-22490565
Coord C2 exon
chr2:22505749-22505828
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTTTGTGCCCTCTAGGTG
3' ss Score
11.86
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTTCACCTATGAGATCGCCCCTGTATTTGTGCTGCTAGAATATGTTACACTAAAGAAAATGAGAGAAATCATTGGCTGGCCCGGGGGCTCTGGCGATGGAATCTTTTCTCCTG
Seq A exon
GTGGCGCCATCTCCAACATGTATGCCATGCTCATTGCCCGCTATAAGATGTTTCCAGAAGTCAAGGAGAAGGGGATGGCAGCAGTGCCCAGGCTCATCGCGTTCACATCAGAGCAT
Seq C2 exon
AGTCACTTTTCTCTCAAGAAGGGAGCTGCAGCCTTAGGGATTGGAACAGACAGTGTGATTCTGATTAAATGTGACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026787-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTATGAGATCGCCCCTG
R:
TCGTCACATTTAATCAGAATCACACT
Band lengths:
188-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: