RnoEX6054392 @ rn6
Exon Skipping
Gene
ENSRNOG00000018200 | Gad2
Description
glutamate decarboxylase 2 [Source:RGD Symbol;Acc:2653]
Coordinates
chr17:89178906-89197902:+
Coord C1 exon
chr17:89178906-89179018
Coord A exon
chr17:89185257-89185372
Coord C2 exon
chr17:89197823-89197902
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTCTGTGCCCTCTAGGTG
3' ss Score
11.42
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTTTACCTATGAGATCGCCCCTGTATTTGTACTACTGGAATATGTGACACTAAAGAAAATGAGGGAAATCATTGGCTGGCCAGGAGGCTCTGGCGATGGAATCTTTTCTCCTG
Seq A exon
GTGGTGCCATCTCCAACATGTACGCCATGCTCATTGCCCGCTATAAGATGTTTCCAGAAGTCAAGGAAAAGGGGATGGCGGCGGTGCCCAGGCTCATCGCATTCACGTCAGAGCAT
Seq C2 exon
AGTCACTTTTCTCTCAAGAAGGGAGCTGCAGCCTTGGGGATCGGAACAGACAGCGTGATTCTGATTAAATGTGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018200-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTATGAGATCGCCCCTGTA
R:
TCATCACATTTAATCAGAATCACGCT
Band lengths:
186-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]