GgaEX1025891 @ galGal3
Exon Skipping
Gene
ENSGALG00000007588 | F1N890_CHICK
Description
NA
Coordinates
chr2:16192890-16203532:-
Coord C1 exon
chr2:16203420-16203532
Coord A exon
chr2:16200518-16200633
Coord C2 exon
chr2:16192890-16192969
Length
116 bp
Sequences
Splice sites
3' ss Seq
TATATTACTGTGGACTCCAGGTG
3' ss Score
5.83
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTTCACCTATGAAATTGCTCCAGTGTTTGTACTTTTGGAATATGTCACGCTACGGAAAATGAGAGAGATGGTTGGCTGGCCAGGGGGCTGTGGCGATGGGATATTTTCACCTG
Seq A exon
GTGGTGCCATATCTAACATGTATGCTATGTTGATTGCACGTTTCAAGATGTTCCCAGAAGTTAAAGAAAAAGGAATGGCAGCTATTCCCAGACTGGTTGCCTTCACATCTGAACAC
Seq C2 exon
AGTCACTTTTCTGTGAAAAAAGGAGCTGCAGCCTTGGGTATTGGTACAGATAGTGTGATTCTGATTAGATGCGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007588-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(10.2=100)
A:
PF0028214=Pyridoxal_deC=FE(10.2=100)
C2:
PF0028214=Pyridoxal_deC=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTATGAAATTGCTCCAGTGT
R:
TCATCGCATCTAATCAGAATCACACT
Band lengths:
188-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]